View & Download CD data for CD0006465000
Cyclin Dependendt Kinase Inhibitor, N-terminal Targeting Domain (1-90) (sic1)
Citation: Gabor Nagy, Soren V Hoffman, Nykola C Jones, Helmut Grubmuller 2024 Applied Spectroscopy 78/9 897-911
Citation: The PCDDB (protein circular dichroism data bank): A bioinformatics resource for protein characterisations and methods development.
Ramalli SG, Miles AJ, Janes RW, Wallace BA., J Mol Biol (2022)
| CSA/ACS Standard Spectrum | Millidegrees_(theta) | File not provided | |
| Raw Sample Spectra | File not provided | ||
| Raw Baseline Spectra | File not provided | ||
| Average Sample | Millidegrees_(theta) | Download |
View Plot |
| Averaged Baseline | Millidegrees_(theta) | Download |
View Plot |
| HT / High Voltage / Dynode Spectra | HT/Dynode Units | Download |
File not provided |
| Net Smoothed Spectrum | Download |
File not provided | |
| Final Processed Spectrum | Delta_Epsilon | Download |
View Plot |
Validation report compiled by Validichro v1.4.0.1, 2025-04-07 15:55:47. - PASS (incomplete)
| Downloads | 294 |
| Depositor | Gabor Nagy |
| Uniprot |
P38634 |
| Alpha Fold | |
| PDB |
|
| EC | |
| CATH Class | |
| Protein Type | intrinsically_disordered |
Sample
| Protein Name | Cyclin Dependendt Kinase Inhibitor, N-terminal targeting domain (1-90) | ? |
| Alternative Protein Names | Sic1 | ? |
| Source Organism | Saccharomyces Cerevisiae (Yeast) | ? |
| Protein Supplier | Andew P. Chong (Forman-Kay Laboratories) | ? |
| Expression System or natural source | S. cerevisiae | ? |
| Expressed As | Wild-type | ? |
| Mutation Details | No data provided | ? |
| Expression tags (if any) | GS | ? |
| Ligands Present and Concentration or ratio | No data provided | ? |
| Macromolecular Partner(s) and Concentration or ratio | No data provided | ? |
| Deposition Date | 2023-11-03 | ? |
Experiment
| CD or SRCD | CD | ? |
| Protein Concentration (mg/ml) | 0.1 | ? |
| Concentration Quantification Method | Extinction Coefficient | ? |
| Protein Purity (%) | No data provided | ? |
| Purity Quantification Method | No data provided | ? |
| Buffer Contents and Concentrations | 50 mM KPO4, 150 mM NaCl, 1 mM EDTA, pH 7 | ? |
| Baseline Contents | 50 mM KPO4, 150 mM NaCl, 1 mM EDTA, pH 7 | ? |
| Experimental Temperature (C) | 25 | ? |
| Instrument or beamline | JASCO-1500 | ? |
| Detector Angle (Scattering Angle) | No data provided | ? |
| Sample Cell Pathlength (cm) | 0.1 | ? |
| Cell Pathlength Calibration Method | Dilution Standards | ? |
| Sample Cell Type | Rectangular-Demountable | ? |
| Sample Cell Composition | Quartz | ? |
| Sample Chamber Atmosphere | Nitrogen | ? |
| Number of repeat scans | 3 | ? |
| Continuous or Stepped scan | Continuous | ? |
| Maximum (highest) wavelength, nm | 260 | ? |
| Minimum (lowest) wavelength, nm | 198 | ? |
| Criteria for low wavelength cutoff | No data provided | ? |
| Wavelength interval, nm | 0.5 | ? |
| Dwell or Averaging time, seconds | No data provided | ? |
| Experimental Collection date | 2023-03-03 | ? |
| Local Spectrum Identifier | No data provided | ? |
Calibration
| CSA or ACS | CSA | ? |
| Dichroism Units for CSA Standard | Millidegrees_(theta) | ? |
| Final Spectrum Calibrated | NO | ? |
| CSA/ACS Standard Concentration (mg/ml) | No data provided | ? |
| CSA/ACS Pathlength (mm) | No data provided | ? |
| CSA/ACS Zeroed at | No data provided | ? |
| CSA/ACS Date Measured | 2023-11-16 | ? |
| CSA/ACS Ratio (192.5nm and 290.0 nm) | No data provided | ? |
| CD signal at 290nm (mdeg) | No data provided | ? |
| CSA/ACS Experiment temperature, C | No data provided | ? |
Sec. struct.
| Secondary Structure Calculated from | No data provided | ? |
| DSSP value: alpha helix | No data provided | ? |
| DSSP value: 3-10 helix | No data provided | ? |
| DSSP value: pi helix | No data provided | ? |
| DSSP value: beta strand | No data provided | ? |
| DSSP value: beta bridge | No data provided | ? |
| DSSP value: bonded turn | No data provided | ? |
| DSSP value: bend | No data provided | ? |
| DSSP value: loop or irregular | No data provided | ? |
Tertiary
| PDB ID | No data provided | ? |
| UniProt ID | P38634 | ? |
| Enzyme Classification (EC) | No data provided | ? |
| Medline Entry | No data provided | ? |
| Cath Classification | No data provided | ? |
| Sequence | GSMTPSTPPR SRGTRYLAQP SGNTSSSALM QGQKTPQKPS QNLVPVTPST TKSFKNAPLL APPNSNMGMT SPFNGLTSPQ RSPFPKSSVK RT | ? |
| Type of protein | intrinsically_disordered | ? |
| Keyword/phrase A | Sic1 | ? |
| Keyword/phrase B | CDK inhibitor | ? |
| Keyword/phrase C | IDP | ? |
| Keyword/phrase D | IDP8 | ? |
| Keyword/phrase E | SIC1 | ? |
| Keyword/phrase F | No data provided | ? |
| Keyword/phrase G | No data provided | ? |
| Keyword/phrase H | No data provided | ? |
| Keyword/phrase I | No data provided | ? |
| Keyword/phrase J | No data provided | ? |
| Publication Authors | Gabor Nagy, Soren V Hoffman, Nykola C Jones, Helmut Grubmuller | ? |
| Publication Year | 2024 | ? |
| Publication Journal | Applied Spectroscopy | ? |
| Publication Title | Reference Data Set for Circular Dichroism Spectroscopy Comprised of Validated Intrinsically Disordered Protein Models | ? |
| Publication Volume | 78/9 | ? |
| Publication Pages | 897-911 | ? |
Validation report compiled by Validichro v1.4.0.1, 2025-04-07 15:55:47. - PASS (incomplete)
Depositors Notes: This Spectrum was kindly provided by Andrew P. Chong, permission to upload the spectrum was granted prior deposition
| Missing Wavelengths | PASS | ? |
| Maximum Delta Epsilon | PASS | ? |
| Minimal Level of Maximum Delta Epsilon | PASS | ? |
| Peak Locations | PASS | ? |
| Feature Width | PASS | ? |
| Experimental Temperature | PASS | ? |
| UniProt sequence | ? | |
| Molecular Weight | PASS | ? |
| Number of Residues | PASS | ? |
| Mean Residue Weight value | PASS | ? |
| Concentration and Pathlength | PASS | ? |
| CSA / ACS peak ratio | INSUFFICIENT DATA | ? |
| CSA / ACS Temperature | INSUFFICIENT DATA | ? |
| Peak Shift test | PASS | ? |
| Standard Deviation | INSUFFICIENT DATA | ? |
| Noise: 260-270nm | PASS | ? |
| Flat topped peaks | PASS | ? |
| Wavelength range | PASS | ? |
| Interval resolution | PASS | ? |
| High Tension Voltage 240-260nm | INSUFFICIENT DATA | ? |
| Projection Test | PASS | ? |
| Standard Deviation At Peak | INSUFFICIENT DATA | ? |
| Depositor Note | This Spectrum was kindly provided by Andrew P. Chong, permission to upload the spectrum was granted prior deposition | ? |