Current PCDDB publication
The PCDDB (protein circular dichroism data bank): A bioinformatics resource for protein characterisations and methods development.
Ramalli SG, Miles AJ, Janes RW, Wallace BA., J Mol Biol (2022)
PCDDB background publications
PCDDB: the protein circular dichroism data bank, a repository for
circular dichroism spectral and metadata.
Whitmore, L., Woollett, B., Miles, A.J., Klose, D.P., Janes, R.W. and Wallace, B.A., Nucleic
Acids Research (2011) 39 (suppl 1) D480-D486.
ValiDichro: a website for validating and quality control of protein circular dichroism spectra.
Woollett, B., Whitmore, L., Janes, R.W. and Wallace, B.A., Nucleic Acids Res. 2013 Jul; 41(Web Server issue): W417–W421.
The Protein Circular Dichroism Data Bank, A Web-based Site for
Access to Circular Dichroism Spectroscopic Data.
Whitmore, L., Woollett, B., Miles, A.J., Janes, R.W. and Wallace, B.A., Structure (2010)
18:1267–1269.
The Protein Circular Dichroism Data Bank (PCDDB): A Bioinformatics and Spectroscopic
resource.
Wallace, B.A., Whitmore, L., and Janes, R.W. PROTEINS: Structure, Function, and Bioinformatics
(2006) 62:1–3.
Protein Circular Dichroism Data Bank (PCDDB): Data Bank and Website Design.
Whitmore, L., Janes, R.W. and Wallace, B.A. Chirality (2006) 18:426–429.
Related publications
Circular Dichroism Spectroscopy of Membrane Proteins.
Miles, A.J., and Wallace, B.A. (2016) Chem. Soc. Reviews, 45, 4859-4872
Circular Dichroism Spectroscopy for Protein Characterisation: Pharmaceutical Applications.
Miles, A.J., Wallace, B.A. (2014) In: Biophysical Characterization
of Proteins in Developing Biopharmaceuticals. (Damian J. Houde and Steven A.
Berkowitz, eds.) Elsevier Press.
Miles and Wallace Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics.
Chem Soc Rev. 2006 Jan;35(1):39-51.
Related Circular Dichroism Tools
K2D3
Prediction of protein secondary structure from circular dichroism using theoretically derived spectra
Louis-Jeune, C., Andrade-Navarro, M. A. & Perez-Iratxeta, C. Proteins: Struct., Funct., Bioinf., 80, 374-381.
BesSel
BeStSel: A web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra
Micsonai, A., Wien, F., Bulyáki, E., Kun, J., Moussong, E., Lee, Y. H., Goto, Y., Réfrégier, M. & Kardos, J. (2018). Nucleic Acids Res. 46, W315- W322.
SESCA
SESCA: Predicting circular dichroism spectra from protein molecular structures.
Nagy, G., Maxim, I., Jones, N. J., Hoffmann, S. V. & Grubmüller, H. (2019). J. Chem. Theory Comput. 15, 5087–5102.