View & Download CD data for CD0006395000
BH1501 Protein (nachbac bacterial voltage gated sodium channel)
Citation: O’Reilly A.O., Powl A.M., D’Avanzo N., Miles A.J., Nichols C.G., Wallace B.A. 2022 FEBS letters
Citation: The PCDDB (protein circular dichroism data bank): A bioinformatics resource for protein characterisations and methods development.
Ramalli SG, Miles AJ, Janes RW, Wallace BA., J Mol Biol (2022)
| CSA/ACS Standard Spectrum | Millidegrees_(theta) | Download |
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| Raw Sample Spectra | Millidegrees_(theta) | Download |
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| Raw Sample Spectra 2 | Millidegrees_(theta) | Download |
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| Raw Sample Spectra 3 | Millidegrees_(theta) | Download |
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| Raw Baseline Spectra | Millidegrees_(theta) | Download |
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| Raw Baseline Spectra 2 | Millidegrees_(theta) | Download |
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| Raw Baseline Spectra 3 | Millidegrees_(theta) | Download |
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| Average Sample | Millidegrees_(theta) | Download |
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| Averaged Baseline | Millidegrees_(theta) | Download |
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| HT / High Voltage / Dynode Spectra | HT/Dynode Units | Download |
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| Net Smoothed Spectrum | Millidegrees_(theta) | Download |
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| Final Processed Spectrum | Delta_Epsilon | Download |
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Validation report compiled by Validichro v1.4.0.1, 2022-01-19 20:36:53. - PASS
| Downloads | 1813 |
| Depositor | Andrew Miles |
| Uniprot |
Q9KCR8 |
| Alpha Fold | |
| PDB |
|
| EC | |
| CATH Class | |
| Protein Type | membrane |
Sample
| Protein Name | BH1501 protein | ? |
| Alternative Protein Names | NachBac Bacterial voltage gated sodium channel | ? |
| Source Organism | B. halodurans | ? |
| Protein Supplier | A. O. O'Reilly | ? |
| Expression System or natural source | E. coli | ? |
| Expressed As | Wild-type | ? |
| Mutation Details | No data provided | ? |
| Expression tags (if any) | N,MGSSHHHHHHSSGLVPRGSH | ? |
| Ligands Present and Concentration or ratio | No data provided | ? |
| Macromolecular Partner(s) and Concentration or ratio | No data provided | ? |
| Deposition Date | 2021-12-31 | ? |
Experiment
| CD or SRCD | SRCD | ? |
| Protein Concentration (mg/ml) | 2 | ? |
| Concentration Quantification Method | Nanodrop | ? |
| Protein Purity (%) | 95 | ? |
| Purity Quantification Method | SDS gels | ? |
| Buffer Contents and Concentrations | 20 mM sodium phosphate; pH 7.6, 100 mM NaCl, 10 % glycerol, 0.3 % Cymal-5 | ? |
| Baseline Contents | 20 mM sodium phosphate; pH 7.6, 100 mM NaCl, 10 % glycerol, 0.3 % Cymal-5 | ? |
| Experimental Temperature (C) | 20 | ? |
| Instrument or beamline | ISA UV1 | ? |
| Detector Angle (Scattering Angle) | No data provided | ? |
| Sample Cell Pathlength (cm) | 0.0024 | ? |
| Cell Pathlength Calibration Method | Interferometry | ? |
| Sample Cell Type | Cylindrical-Demountable | ? |
| Sample Cell Composition | Suprasil | ? |
| Sample Chamber Atmosphere | Nitrogen | ? |
| Number of repeat scans | 3 | ? |
| Continuous or Stepped scan | Stepped | ? |
| Maximum (highest) wavelength, nm | 260 | ? |
| Minimum (lowest) wavelength, nm | 180 | ? |
| Criteria for low wavelength cutoff | HT value | ? |
| Wavelength interval, nm | 1 | ? |
| Dwell or Averaging time, seconds | 2 | ? |
| Experimental Collection date | 2010-11-11 | ? |
| Local Spectrum Identifier | a21068 | ? |
Calibration
| CSA or ACS | CSA | ? |
| Dichroism Units for CSA Standard | Millidegrees_(theta) | ? |
| Final Spectrum Calibrated | YES | ? |
| CSA/ACS Standard Concentration (mg/ml) | 8.3 | ? |
| CSA/ACS Pathlength (mm) | 0.1 | ? |
| CSA/ACS Zeroed at | 235-245 | ? |
| CSA/ACS Date Measured | 2010-11-11 | ? |
| CSA/ACS Ratio (192.5nm and 290.0 nm) | 2.0 | ? |
| CD signal at 290nm (mdeg) | 29.1 | ? |
| CSA/ACS Experiment temperature, C | 25 | ? |
Sec. struct.
| Secondary Structure Calculated from | No data provided | ? |
| DSSP value: alpha helix | No data provided | ? |
| DSSP value: 3-10 helix | No data provided | ? |
| DSSP value: pi helix | No data provided | ? |
| DSSP value: beta strand | No data provided | ? |
| DSSP value: beta bridge | No data provided | ? |
| DSSP value: bonded turn | No data provided | ? |
| DSSP value: bend | No data provided | ? |
| DSSP value: loop or irregular | No data provided | ? |
Tertiary
| PDB ID | No data provided | ? |
| UniProt ID | Q9KCR8 | ? |
| Enzyme Classification (EC) | No data provided | ? |
| Medline Entry | No data provided | ? |
| Cath Classification | No data provided | ? |
| Sequence | MGSSHHHHHH SSGLVPRGSH MKMEARQKQN SFTSKMQKIV NHRAFTFTVI ALILFNALIV GIETYPRIYA DHKWLFYRID LVLLWIFTIE IAMRFLASNP KSAFFRSSWN WFDFLIVAAG HIFAGAQFVT VLRILRVLRV LRAISVVPSL RRLVDALVMT IPALGNILIL MSIFFYIFAV IGTMLFQHVS PEYFGNLQLS LLTLFQVVTL ESWASGVMRP IFAEVPWSWL YFVSFVLIGT FIIFNLFIGV IVNNVEKAEL TDNEEDGEAD GLKQEISALR KDVAELKSLL KQSK | ? |
| Type of protein | membrane | ? |
| Keyword/phrase A | NaChBac voltage gated sodium channel | ? |
| Keyword/phrase B | No data provided | ? |
| Keyword/phrase C | No data provided | ? |
| Keyword/phrase D | No data provided | ? |
| Keyword/phrase E | No data provided | ? |
| Keyword/phrase F | No data provided | ? |
| Keyword/phrase G | No data provided | ? |
| Keyword/phrase H | No data provided | ? |
| Keyword/phrase I | No data provided | ? |
| Keyword/phrase J | No data provided | ? |
| Publication Authors | O’Reilly A.O., Powl A.M., D’Avanzo N., Miles A.J., Nichols C.G., Wallace B.A. | ? |
| Publication Year | 2022 | ? |
| Publication Journal | FEBS letters | ? |
| Publication Title | The T1-tetramerization Domain of Kv1.2 Rescues Expression and Preserves Function of a Truncated NaChBac Sodium Channel | ? |
| Publication Volume | No data provided | ? |
| Publication Pages | No data provided | ? |
Validation report compiled by Validichro v1.4.0.1, 2022-01-19 20:36:53. - PASS
Depositors Notes:
| Missing Wavelengths | PASS | ? |
| Maximum Delta Epsilon | PASS | ? |
| Minimal Level of Maximum Delta Epsilon | PASS | ? |
| Peak Locations | PASS | ? |
| Feature Width | PASS | ? |
| Experimental Temperature | PASS | ? |
| UniProt sequence | ? | |
| Molecular Weight | PASS | ? |
| Number of Residues | PASS | ? |
| Mean Residue Weight value | PASS | ? |
| Concentration and Pathlength | PASS | ? |
| CSA / ACS peak ratio | PASS | ? |
| CSA / ACS Temperature | PASS | ? |
| Peak Shift test | PASS | ? |
| Standard Deviation | PASS | ? |
| Noise: 260-270nm | PASS | ? |
| Flat topped peaks | PASS | ? |
| Wavelength range | PASS | ? |
| Interval resolution | PASS | ? |
| High Tension Voltage 240-260nm | PASS | ? |
| Projection Test | PASS | ? |
| Standard Deviation At Peak | PASS | ? |
| Depositor Note | ? |