View & Download CD data for CD0004243000
GIP1 (gamma-tuc protein3-interacting protein 1)
Citation: Morgane Batzenschlager, Kinda Masoud, Natacha Janski, Guy Houlne, Etienne Herzog, Jean-Luc Evrard, Nicolas Baumberger, Mathieu Ehrardt, Yves Nomine, Bruno Kieffer, Anne-Catherine Schmit and Marie-Edith Chaboute Frontiers in Plant Traffic and Transport
Citation: The PCDDB (protein circular dichroism data bank): A bioinformatics resource for protein characterisations and methods development.
Ramalli SG, Miles AJ, Janes RW, Wallace BA., J Mol Biol (2022)
| CSA/ACS Standard Spectrum | ---- Please select ---- | File not provided | |
| Raw Sample Spectra | ---- Please select ---- | File not provided | |
| Raw Baseline Spectra | ---- Please select ---- | File not provided | |
| Average Sample | ---- Please select ---- | File not provided | |
| Averaged Baseline | ---- Please select ---- | File not provided | |
| HT / High Voltage / Dynode Spectra | HT/Dynode Units | File not provided | |
| Net Smoothed Spectrum | ---- Please select ---- | File not provided | |
| Final Processed Spectrum | Delta Epsilon | Download |
View Plot |
Validation report compiled by Validichro v1.2.5, 2013-11-25, 1:40pm. - FLAG
| Downloads | 807 |
| Depositor | Yves Nomine |
| Uniprot |
Q9M0N8 |
| Alpha Fold | |
| PDB |
|
| EC | |
| CATH Class | |
| Protein Type | soluble globular |
Sample
| Protein Name | GIP1 | ? |
| Alternative Protein Names | Gamma-TuC protein3-interacting protein 1 | ? |
| Source Organism | Arabidopsis thaliana | ? |
| Protein Supplier | Institut de Biologie Molculaire des Plantes | ? |
| Expression System or natural source | E. coli | ? |
| Expressed As | Wild-type | ? |
| Mutation Details | 1-8del | ? |
| Expression tags (if any) | N,MGHHHHHH | ? |
| Ligands Present and Concentration or ratio | none | ? |
| Macromolecular Partner(s) and Concentration or ratio | none | ? |
| Deposition Date | 2013-12-02 | ? |
Experiment
| CD or SRCD | CD | ? |
| Protein Concentration (mg/ml) | 0.21 | ? |
| Concentration Quantification Method | Bradford assay | ? |
| Protein Purity (%) | No data provided | ? |
| Purity Quantification Method | No data provided | ? |
| Buffer Contents and Concentrations | Sodium phosphate 10 mM pH 7.4, NaCl 25 mM, Nvoy polymer 1 mg/ml | ? |
| Baseline Contents | Sodium phosphate 10 mM pH 7.4, NaCl 25 mM, Nvoy polymer 1 mg/ml | ? |
| Experimental Temperature (C) | 25 | ? |
| Instrument or beamline | Jasco | ? |
| Detector Angle (Scattering Angle) | No data provided | ? |
| Sample Cell Pathlength (cm) | 0.01 | ? |
| Cell Pathlength Calibration Method | Manufacturers Spec. | ? |
| Sample Cell Type | Rectangular-Demountable | ? |
| Sample Cell Composition | Suprasil | ? |
| Sample Chamber Atmosphere | Nitrogen | ? |
| Number of repeat scans | 25 | ? |
| Continuous or Stepped scan | Continuous | ? |
| Maximum (highest) wavelength, nm | 260 | ? |
| Minimum (lowest) wavelength, nm | 182 | ? |
| Criteria for low wavelength cutoff | Noise level | ? |
| Wavelength interval, nm | 0.5 | ? |
| Dwell or Averaging time, seconds | .5 | ? |
| Experimental Collection date | 2011-06-07 | ? |
| Local Spectrum Identifier | No data provided | ? |
Calibration
| CSA or ACS | CSA | ? |
| Dichroism Units for CSA Standard | No data provided | ? |
| Final Spectrum Calibrated | ---- Please sele | ? |
| CSA/ACS Standard Concentration (mg/ml) | No data provided | ? |
| CSA/ACS Pathlength (mm) | No data provided | ? |
| CSA/ACS Zeroed at | No data provided | ? |
| CSA/ACS Date Measured | 0000-00-00 | ? |
| CSA/ACS Ratio (192.5nm and 290.0 nm) | 2.02 | ? |
| CD signal at 290nm (mdeg) | No data provided | ? |
| CSA/ACS Experiment temperature, C | 25 | ? |
Sec. struct.
| Secondary Structure Calculated from | No data provided | ? |
| DSSP value: alpha helix | No data provided | ? |
| DSSP value: 3-10 helix | No data provided | ? |
| DSSP value: pi helix | No data provided | ? |
| DSSP value: beta strand | No data provided | ? |
| DSSP value: beta bridge | No data provided | ? |
| DSSP value: bonded turn | No data provided | ? |
| DSSP value: bend | No data provided | ? |
| DSSP value: loop or irregular | No data provided | ? |
Tertiary
| PDB ID | No data provided | ? |
| UniProt ID | Q9M0N8 | ? |
| Enzyme Classification (EC) | No data provided | ? |
| Medline Entry | No data provided | ? |
| Cath Classification | No data provided | ? |
| Sequence | MGHHHHHHAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H | ? |
| Type of protein | soluble globular | ? |
| Keyword/phrase A | mitotic spindle organization protein | ? |
| Keyword/phrase B | GCP3-interacting protein | ? |
| Keyword/phrase C | Nuclear envelope located protein | ? |
| Keyword/phrase D | No data provided | ? |
| Keyword/phrase E | No data provided | ? |
| Keyword/phrase F | No data provided | ? |
| Keyword/phrase G | No data provided | ? |
| Keyword/phrase H | No data provided | ? |
| Keyword/phrase I | No data provided | ? |
| Keyword/phrase J | No data provided | ? |
| Publication Authors | Morgane Batzenschlager, Kinda Masoud, Natacha Janski, Guy Houlne, Etienne Herzog, Jean-Luc Evrard, Nicolas Baumberger, Mathieu Ehrardt, Yves Nomine, Bruno Kieffer, Anne-Catherine Schmit and Marie-Edith Chaboute | ? |
| Publication Year | No data provided | ? |
| Publication Journal | Frontiers in Plant Traffic and Transport | ? |
| Publication Title | The GIP gamma-tubulin complex-associated proteins are involved in nuclear architecture in Arabidopsis thaliana | ? |
| Publication Volume | No data provided | ? |
| Publication Pages | No data provided | ? |
Validation report compiled by Validichro v1.2.5, 2013-11-25, 1:40pm. - FLAG
Depositors Notes:
| Missing Wavelengths | INSUFFICIENT DATA | ? |
| Maximum Delta Epsilon | INSUFFICIENT DATA | ? |
| Minimal Level of Maximum Delta Epsilon | INSUFFICIENT DATA | ? |
| Peak Locations | INSUFFICIENT DATA | ? |
| Feature Width | INSUFFICIENT DATA | ? |
| Experimental Temperature | PASS | ? |
| UniProt sequence | FLAG | ? |
| Molecular Weight | PASS | ? |
| Number of Residues | PASS | ? |
| Mean Residue Weight value | PASS | ? |
| Concentration and Pathlength | FLAG | ? |
| CSA / ACS peak ratio | INSUFFICIENT DATA | ? |
| CSA / ACS Temperature | PASS | ? |
| Peak Shift test | INSUFFICIENT DATA | ? |
| Standard Deviation | INSUFFICIENT DATA | ? |
| Noise: 260-270nm | INSUFFICIENT DATA | ? |
| Flat topped peaks | INSUFFICIENT DATA | ? |
| Wavelength range | INSUFFICIENT DATA | ? |
| Interval resolution | PASS | ? |
| High Tension Voltage 240-260nm | INSUFFICIENT DATA | ? |
| Projection Test | INSUFFICIENT DATA | ? |
| Standard Deviation At Peak | INSUFFICIENT DATA | ? |
| Depositor Note | ? |