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Record for CD0004249000 (oxidized yeast TOR1 FATC (residues 2438-2470 = y1fatc))

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Sample

PCDDBIDCD0004249000Help icon, hover over for help text.
Protein Nameoxidized yeast TOR1 FATC (residues 2438-2470 = y1fatc)Help icon, hover over for help text.
Alternative Protein NamesNo data providedHelp icon, hover over for help text.
Source OrganismSaccharomyces cerevisiaeHelp icon, hover over for help text.
Protein SupplierTU Munich, Department of ChemistryHelp icon, hover over for help text.
Expression System or natural sourceE. coliHelp icon, hover over for help text.
Expressed AsWild-typeHelp icon, hover over for help text.
Mutation DetailsNo data providedHelp icon, hover over for help text.
Expression tags (if any)No data providedHelp icon, hover over for help text.
Ligands Present and Concentration or ratioNo data providedHelp icon, hover over for help text.
Macromolecular Partner(s) and Concentration or ratioNo data providedHelp icon, hover over for help text.
Deposition Date2014-05-27Help icon, hover over for help text.

Spectra

PCDDBIDCD0004249000Help icon, hover over for help text.
Raw Sample SpectraNo data providedHelp icon, hover over for help text.
Dichroism Units of Raw Sample DataNo data providedHelp icon, hover over for help text.
HT / High Voltage / Dynode Spectra file   chartHelp icon, hover over for help text.
Raw Baseline SpectraNo data providedHelp icon, hover over for help text.
Dichroism Units of Raw Baseline DataNo data providedHelp icon, hover over for help text.
Average Sample file   chartHelp icon, hover over for help text.
Dichroism Units of Average Sample DataMillidegrees (theta)Help icon, hover over for help text.
Averaged Baseline file   chartHelp icon, hover over for help text.
Dichroism Units of Averaged Baseline DataMillidegrees (theta)Help icon, hover over for help text.
Net Smoothed Spectrum file   chartHelp icon, hover over for help text.
Dichroism Units of Net Smoothed DataMillidegrees (theta)Help icon, hover over for help text.
Final Processed Spectrum file   chartHelp icon, hover over for help text.
Dichroism Units of Processed DataMean Residue EllipticityHelp icon, hover over for help text.

Experiment

PCDDBIDCD0004249000Help icon, hover over for help text.
CD or SRCDCDHelp icon, hover over for help text.
Protein Concentration (mg/ml)0.12Help icon, hover over for help text.
Concentration Quantification MethodA280 or A280-denaturedHelp icon, hover over for help text.
Protein Purity (%)No data providedHelp icon, hover over for help text.
Purity Quantification MethodNo data providedHelp icon, hover over for help text.
Buffer Contents and Concentrations10mM Phosphatbuffer, 1.463mM DMPC/DMPG 1:1, P:L 1:50Help icon, hover over for help text.
Baseline Contents10mM Phosphatbuffer, 1.463mM DMPC/DMPG 1:1, P:L 1:50Help icon, hover over for help text.
Experimental Temperature (C)30Help icon, hover over for help text.
Instrument or beamlineJascoHelp icon, hover over for help text.
Detector Angle (Scattering Angle)No data providedHelp icon, hover over for help text.
Sample Cell Pathlength (cm)0.1Help icon, hover over for help text.
Cell Pathlength Calibration MethodManufacturers Spec.Help icon, hover over for help text.
Sample Cell TypeRectangularHelp icon, hover over for help text.
Sample Cell CompositionSuprasilHelp icon, hover over for help text.
Sample Chamber AtmosphereNitrogenHelp icon, hover over for help text.
Number of repeat scans3Help icon, hover over for help text.
Continuous or Stepped scanContinuousHelp icon, hover over for help text.
Maximum (highest) wavelength, nm260Help icon, hover over for help text.
Minimum (lowest) wavelength, nm180Help icon, hover over for help text.
Criteria for low wavelength cutoffHT valueHelp icon, hover over for help text.
Wavelength interval, nm0.1Help icon, hover over for help text.
Dwell or Averaging time, seconds8 sec ResponseHelp icon, hover over for help text.
Experimental Collection date2011-06-15Help icon, hover over for help text.
Local Spectrum IdentifierNo data providedHelp icon, hover over for help text.

Calibration

PCDDBIDCD0004249000Help icon, hover over for help text.
CSA or ACSACSHelp icon, hover over for help text.
CSA/ACS Standard Spectrum file   chartHelp icon, hover over for help text.
Dichroism Units for CSA StandardNo data providedHelp icon, hover over for help text.
Final Spectrum CalibratedYESHelp icon, hover over for help text.
CSA/ACS Standard Concentration (mg/ml)0.6Help icon, hover over for help text.
CSA/ACS Pathlength (mm)0.1Help icon, hover over for help text.
CSA/ACS Zeroed at350Help icon, hover over for help text.
CSA/ACS Date Measured2011-05-19Help icon, hover over for help text.
CSA/ACS Ratio (192.5nm and 290.0 nm)2.036Help icon, hover over for help text.
CD signal at 290nm (mdeg)18.9452Help icon, hover over for help text.
CSA/ACS Experiment temperature, C25Help icon, hover over for help text.

Data Process

PCDDBIDCD0004249000Help icon, hover over for help text.
Molecular Weight3960.4Help icon, hover over for help text.
Number of Residues33Help icon, hover over for help text.
Mean Residue Weight123.7625Help icon, hover over for help text.
Data Processing Software NameJascoHelp icon, hover over for help text.
Data Processing Software Version1.24.00Help icon, hover over for help text.
Number of Smoothing Points21Help icon, hover over for help text.
Wavelength Range for Zeroing260Help icon, hover over for help text.

Sec. Struct.

PCDDBIDCD0004249000Help icon, hover over for help text.
Secondary Structure Calculated fromNo data providedHelp icon, hover over for help text.
DSSP value: alpha helixNo data providedHelp icon, hover over for help text.
DSSP value: 3-10 helixNo data providedHelp icon, hover over for help text.
DSSP value: pi helixNo data providedHelp icon, hover over for help text.
DSSP value: beta strandNo data providedHelp icon, hover over for help text.
DSSP value: beta bridgeNo data providedHelp icon, hover over for help text.
DSSP value: bonded turnNo data providedHelp icon, hover over for help text.
DSSP value: bendNo data providedHelp icon, hover over for help text.
DSSP value: loop or irregularNo data providedHelp icon, hover over for help text.

Info.

PCDDBIDCD0004249000Help icon, hover over for help text.
PDB ID2kio: RSCBpdb PDBj PDBeHelp icon, hover over for help text.
UniProt IDP35169 Help icon, hover over for help text.
Enzyme Classification (EC)No data providedHelp icon, hover over for help text.
Medline EntryNo data providedHelp icon, hover over for help text.
Cath ClassificationNo data providedHelp icon, hover over for help text.
SequenceNELDVPEQVD KLIQQATSIE RLCQHYIGWC PFW Help icon, hover over for help text.
Type of proteinmembraneHelp icon, hover over for help text.
Keyword/phrase Aser/thr kinaseHelp icon, hover over for help text.
Keyword/phrase Bin LipidvesiclesHelp icon, hover over for help text.
Keyword/phrase CNo data providedHelp icon, hover over for help text.
Keyword/phrase DNo data providedHelp icon, hover over for help text.
Keyword/phrase ENo data providedHelp icon, hover over for help text.
Keyword/phrase FNo data providedHelp icon, hover over for help text.
Keyword/phrase GNo data providedHelp icon, hover over for help text.
Keyword/phrase HNo data providedHelp icon, hover over for help text.
Keyword/phrase INo data providedHelp icon, hover over for help text.
Keyword/phrase JNo data providedHelp icon, hover over for help text.
Publication AuthorsL. A. M. Sommer, J. J. Janke, W. F. D. Bennett, J. Buerck, A. S. Ulrich, D. P. Tieleman, and S. A. DamesHelp icon, hover over for help text.
Publication Year2014Help icon, hover over for help text.
Publication JournalJ. Phys. Chem. BHelp icon, hover over for help text.
Publication TitleCharacterization of the Immersion Properties of the Peripheral Membrane Anchor of the FATC Domain of the Kinase Target of Rapamycin by NMR, Oriented CD Spectroscopy, and MD SimulationsHelp icon, hover over for help text.
Publication Volume118Help icon, hover over for help text.
Publication Pages48174831Help icon, hover over for help text.
Citation PublicationNo data providedHelp icon, hover over for help text.

Depositor

PCDDBIDCD0004249000Help icon, hover over for help text.
Depositor NameJochen BuerckHelp icon, hover over for help text.
Department/School nameInstitute for Biological Interfaces (IBG-2)Help icon, hover over for help text.
University/Institution/CorporationKarlsruhe Institute of TechnologyHelp icon, hover over for help text.
Depositor CountryGermanyHelp icon, hover over for help text.
Name of Principal Investigator (if not depositor)Jochen BuerckHelp icon, hover over for help text.

Validation

PCDDBID CD0004249000 Help icon, hover over for help text.
Missing Wavelengths INSUFFICIENT DATA Help icon, hover over for help text.
Maximum Delta Epsilon INSUFFICIENT DATA Help icon, hover over for help text.
Minimal Level of Maximum Delta Epsilon INSUFFICIENT DATA Help icon, hover over for help text.
Peak Locations INSUFFICIENT DATA Help icon, hover over for help text.
Feature Width INSUFFICIENT DATA Help icon, hover over for help text.
Experimental Temperature PASS Help icon, hover over for help text.
UniProt sequence INSUFFICIENT DATA Help icon, hover over for help text.
Molecular Weight PASS Help icon, hover over for help text.
Number of Residues PASS Help icon, hover over for help text.
Mean Residue Weight value PASS Help icon, hover over for help text.
Concentration and Pathlength PASS Help icon, hover over for help text.
CSA / ACS peak ratio INSUFFICIENT DATA Help icon, hover over for help text.
CSA / ACS Temperature PASS Help icon, hover over for help text.
Peak Shift test INSUFFICIENT DATA Help icon, hover over for help text.
Standard Deviation INSUFFICIENT DATA Help icon, hover over for help text.
Noise: 260-270nm INSUFFICIENT DATA Help icon, hover over for help text.
Flat topped peaks INSUFFICIENT DATA Help icon, hover over for help text.
Wavelength range INSUFFICIENT DATA Help icon, hover over for help text.
Interval resolution PASS Help icon, hover over for help text.
High Tension Voltage 240-260nm INSUFFICIENT DATA Help icon, hover over for help text.
Projection Test INSUFFICIENT DATA Help icon, hover over for help text.
Standard Deviation At Peak INSUFFICIENT DATA Help icon, hover over for help text.
Overall validation level is: PASS (Incomplete)
Validation report compiled by Validichro v1.3.0, 2014-05-27, 9:24am.
Depositor comment for validation report :
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